new snp1 load feat-file=./eg2.raw.vcf,feat-file-type=VCF

# percent GC plot
%GC0-100 innerf=1.03,opacity=0.6,heightf=0.07,graph-min=0,graph-max=100,window-size=100

# outer coordinate circle
coords outerf=1.05,tick-interval=1000,label-interval=5000,label-units=kb

# forward and reverse strand genes
small-cgap
genes-fwd heightf=0.05
tRNAs-fwd heightf=0.05,innerf=same
rRNAs-fwd heightf=0.05,innerf=same
tiny-cgap
genes-rev heightf=0.05
tRNAs-rev heightf=0.05,innerf=same
rRNAs-rev heightf=0.05,innerf=same

small-cgap

# all SNPs
new all_snps rectangle feat-type=SNP,heightf=0.03
medium-label label-text=All Variants